Julie, sorry to hear about the combat death...in my line of work, we hear alot about them. I hope all goes as well as it can with the plans.
Something to try (of course, implying the incredible amount of patience that this requires with growth and bloom time that goes along with this kind of project), if the species traits aren't as prevalent, it would always be possible to recross the new hybrid with the species plant again...to strengthen whatever traits that are expressed but not as pronounced as before...the major drawback being though that the species plant is a wild card, so the variation among offspring will probably increase (but now we're talking plant genetics with is oft a strange world and unpredictable).
For those of you interested, we did have a good day at the lab. Working with a hood is ALOT different than the semi sterile methods that I am somewhat acustomed to. After preforming all of these little steps over and over again, it is really abvious how accidental contamination happens! Trying not to reach for something outside of the hood, and if you do, saying "oh crap!" and hosing yourself down with ethanol again. In some ways the hood is easier I think (open flasks, easier to plate the seeds...petri dishes to take a small sample of seed and look for embryos under a microscope).
And yes, there are some interesting photos...and interesting marks left behind by nitrile gloves...




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