Yes they are protocorms - all orchid seedlings go through this stage, and the growth promoters used in the agar encourage it. The ideal way - what a pro' outfit would do, is replate them ,i.e. put them on the surface of new agar in a new flask and grow them on. I find that seedlings a couple of inches tall grow best when deflasked, smaller ones are always difficut.
But if you don't have flasking facilities, then I would suggest chopped sphagnum moss as a compost, but they will need to be in a propagator - high humidity, never totally drying put for long, to stand any chance.




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